Project Details
TRR 267: Non-coding RNA in the cardiovascular system
Subject Area
Medicine
Biology
Biology
Term
since 2019
Website
Homepage
Project identifier
Deutsche Forschungsgemeinschaft (DFG) - Project number 403584255
Despite considerable therapeutic progress, diseases of the cardiovascular system are still the leading cause of death in Western societies and worldwide. In the last two decades, drug development based on protein targets has yielded only incremental benefit, thus prompting a paradigm shift towards new classes of targets and drugs. Nucleic acids open enormous possibilities, both as targets or active therapeutic entities. This became evident by the success of mRNA-based COVID-19 vaccines, and also by the approval of several oligonucleotide-based drugs – achievements that became possible through breakthroughs in nucleic acid technologies, including the synthesis of chemically modified and cell type-directed nucleic acids. In parallel, non-coding (nc)RNA molecules were unravelled as a new class of drug targets in various diseases, including cardiovascular disease where the first ncRNA-targeting drugs are now in Phase I/II clinical trials. Nonetheless, the field faces the tremendous task to identify critical ncRNAs among the thousands of unexplored candidates, to define their cardiovascular role, and to develop their therapeutic manipulation. The Collaborative Research Centre TRR 267 was founded in 2019 as the first research consortium in Germany to focus on ncRNAs in a disease context. Our consortium has applied and improved highly innovative methods for ncRNA analysis, including TWAS to identify disease-disposing SNPs in ncRNA genes, quantitative and spatial expression analysis at the single-cell level, and RNA imaging at the subcellular level. TRR 267 has discovered, characterised and validated ncRNAs as targets in cardiovascular disease and provided proof of concept for their therapeutic exploitation. Strong scientific output, a powerful transdisciplinary structure, and efficient career programmes make TRR 267 a highly visible consortium, and our policy of innovation and collaboration will continue to push this nascent field further. A key facet are recruitment and career programmes to increase the proportion of female scientists and scientists in their early career. We will also further strengthen the sharing and analysis of data to optimise the collaborative usage of the immense amount of information generated. Whereas our principle structuring in two research areas for cardiovascular ncRNAs remains (A: Regulation & mechanisms of action, B: Disease relevance), we will adjust the project focus where needed to adapt to new scientific questions. A further emphasis is placed on lncRNAs, where the few of the candidates analysed thus far (>19000 are believed to be functional) have clearly demonstrated therapeutic potential. Three of the four new research projects focus on lncRNAs and each of them is led by an early-career PI. Adaptions to emerging scientific questions, a growing connectivity to translational consortia, and structural measures will continue to strengthen the prominent position of TRR 267 in the evolving field of non-coding RNAs.
DFG Programme
CRC/Transregios
Current projects
- A02 - Mex3a-dependent regulation of microRNAs in cardiac disease (Project Heads Sattler, Michael ; Weber, Christian )
- A03 - The role of arcRNAs and nuclear condensate dynamics in the splicing response to hypoxia (Project Heads Müller-McNicoll, Michaela ; Zarnack, Katharina )
- A04 - Vascular lncRNAs in the control of the BRG1 remodeling complex (Project Heads Brandes, Ralf P. ; Leisegang, Matthias S. )
- A05 - ncRNA control of multi-protein complex activity (Project Heads Braun, Thomas ; Böttger, Thomas )
- A06 - Vascular gene expression control through DNA:DNA:RNA triplex-formation by lncRNAs (Project Heads Brandes, Ralf P. ; Schwalbe, Harald )
- A08 - Alternative splicing regulation in the cardiac system by CTCF and lncRNA interaction (Project Heads Grote, Phillip ; Laugwitz, Karl-Ludwig )
- A09 - Localisation-dependent function of lncRNAs in cardiovascular disease: from mechanism to phenotype (Project Head Dumbovic, Gabrijela )
- A10 - Microproteins encoded by “non-coding” RNAs in vascular disease (Project Head Fleming, Ph.D., Ingrid )
- B01 - Circular RNAs as targets to prevent cardiac damage and to induce cardiomyocyte proliferation (Project Heads Bär, Ph.D., Christian ; Thum, Ph.D., Thomas )
- B03 - LncRNA control of cardiac inflammation (Project Heads Cremer, Sebastian ; Dimmeler, Stefanie ; Jaé, Nicolas )
- B04 - Long non-coding RNAs in vascular ageing, remodeling, and abdominal aortic aneurysms (Project Heads Boon, Reinier ; Mägdefessel, Lars )
- B05 - Discovery and characterisation of genetically determined lncRNA splicing and isoforms in coronary artery disease (Project Heads Chen, Zhifen ; Schunkert, Heribert )
- B06 - Macrophage lncRNAs in heart repair (Project Heads Dueck, Anne ; Engelhardt, Stefan ; Moretti, Ph.D., Alessandra )
- B08 - Cell-specific genome editing to decipher the hypertrophic effect of Meg3 (Project Heads Bähr, Andrea ; Kupatt, Christian ; Schnieke, Angelika )
- B10 - Decoding the targets of CVD-relevant lncRNAs and genetically deciphering their mechanisms of action in vivo (Project Head Andergassen, Daniel )
- B11 - Non-coding RNAs regulating cardiac innervation (Project Head Engelhardt, Stefan )
- Z01 - Central administration (Project Head Engelhardt, Stefan )
- Z02 - Mass spectrometry and computational RNA biology platform (Project Heads Marsico, Annalisa ; Meitinger, Thomas ; Wittig, Ilka )
- Z03 - Bioinformatic analysis platform (Project Heads Gagneur, Julien ; Schulz, Marcel )
Completed projects
- A01 - Elucidating protein-RNA interactions in circRNA biogenesis and function (Project Heads Dimmeler, Stefanie ; Zarnack, Katharina )
- A07 - Mechanisms of circular RNAs in cardiovascular cell differentiation (Project Heads Holdt, Lesca Miriam ; Teupser, Daniel )
- B02 - LncRNA loci in early cardiac lineage commitment and heart function (Project Head Grote, Phillip )
- B07 - RNA regulatory mechanisms in cardiac metabolism (Project Head Krishnan, Ph.D., Jaya )
- B09 - Non-coding RNA control of cardiac repolarisation (Project Heads Engelhardt, Stefan ; Moretti, Ph.D., Alessandra )
Applicant Institution
Technische Universität München (TUM)
Co-Applicant Institution
Goethe-Universität Frankfurt am Main
Participating University
Ludwig-Maximilians-Universität München; Medizinische Hochschule Hannover
Participating Institution
Georg-Speyer-Haus
Institut für Tumorbiologie und experimentelle Therapie; Helmholtz Zentrum München
Deutsches Forschungszentrum für Gesundheit und Umwelt
Institut für Computational Biology (ICB); Max-Planck-Institut für Herz- und Lungenforschung
W.G. Kerkhoff-Institut
Institut für Tumorbiologie und experimentelle Therapie; Helmholtz Zentrum München
Deutsches Forschungszentrum für Gesundheit und Umwelt
Institut für Computational Biology (ICB); Max-Planck-Institut für Herz- und Lungenforschung
W.G. Kerkhoff-Institut
Spokesperson
Professor Dr. Stefan Engelhardt