Population genetics of the endangered Colombian turtle Podocnemis lewyana and molecular phylogney of the ancient South American and Malagsy river turtles (Reptilia: Testudines: Podocnemididae)
Final Report Abstract
Population genetics of the endangered Colombian turtle Podocnemis lewyana: Podocnemis lewyana is an endemic river turtle of Colombia that is endangered due to anthropogenic impact. Using ten unlinked polymorphic microsatellite loci and a 691-bplong DNA fragment corresponding to the more variable portion of the mitochondrial control region, we investigated genetic diversity and population structure throughout its range. Both neutral markers showed extremely low diversity and weak population differentiation. Our data indicate that the genetic history of P. lewyana has been influenced by multiple bottlenecks, local extinction, population expansion, and re-colonization since the Pleistocene. The resulting negligible differentiation pattern was most likely aggravated by the species’ small distribution range. Based on weak differences in allele frequencies among populations, we suggest that three regions should be treated as demographically independent Management Units in order to preserve a maximum of genetic diversity: (1) the Upper Magdalena River Basin, (2) the Lower Magdalena + Lower Cauca + San Jorge River Basins, and (3) the Sinú River Basin. Among the Management Units, only low to moderate levels of gene flow were detected that is largely unidirectional from Management Units 1 and 3 into Management Unit 2. Molecular phylogeny and divergence times of ancient South American and Malagasy river turtles (Testudines: Pleurodira: Podocnemididae): The eight extant podocnemidid species are the last survivors of a speciose ancient group of turtles known to have existed since the Cretaceous. One species, representing the monotypic genus Erymnochelys, occurs on Madagascar; the remaining seven species are confined to South America (Peltocephalus: one species; Podocnemis: six species). Phylogenetic relationships of all extant species were reconstructed from six mitochondrial (3385 bp) and six nuclear DNA fragments (4115 bp) in separate and combined analyses (Bayesian inference, Maximum Likelihood, Maximum Parsimony). In a total evidence approach for all concatenated genes, all methods yielded the same well-supported phylogenetic hypothesis for the three basal lineages. The Malagasy genus Erymnochelys is sister to the South American Podocnemis, and Peltocephalus constitutes the sister taxon to Erymnochelys + Podocnemis. Within Podocnemis, P. unifilis + (P. erythrocephala + P. lewyana) constitute a well-supported crown clade; P. sextuberculata, P. vogli, and P. expansa were revealed as successive sister taxa. According to Bayesian relaxed molecular clock calculations calibrated with fossil evidence, Peltocephalus originated during a period of the Late Cretaceous (86 mya), when a contiguous Gondwana landmass exclusive of Africa is likely to have still existed. The Late Cretaceous split between Erymnochelys and Podocnemis (78 mya) coincides with the supposed submergence of the land bridge between Madagascar and Antarctica + South America, suggesting that the origin of those genera is linked to this vicariant event. The extant Podocnemis species evolved from the Late Eocene (37 mya) to the Middle Miocene (15 mya), during a phase characterized by dramatic global cooling, aridification, and massive Andean uplift.
Publications
- 2008. Molecular phylogeny and divergence times of ancient South American and Malagasy river turtles (Testudines: Pleurodira: Podocnemididae). Organisms Diversity & Evolution, 8: 388-398
Vargas-Ramírez M., Castaño-Mora OV, Fritz U
