SFB 1588:
Decoding and Targeting Mechanisms of Neuroblastoma Evolution
Subject Area
Medicine
Biology
Term
since 2023
Project identifier
Deutsche Forschungsgemeinschaft (DFG) - Project number 493872418
The devastating childhood tumor, neuroblastoma, represents a great challenge for the pediatric oncologist. Poor survival is mainly due to relapse resulting from therapy resistance and early metastasis. Recent studies indicate treatment failure is driven by the complex process of tumor evolution, studied mainly by genetic approaches to date. Newest molecular insights obtained by CRC partners and others challenge that sequential genetic evolution is the paramount cause of relapse, and propose an additional range of non-genetic mechanisms and adaptive phenotypes behind therapy evasion. With this new view, neuroblastoma research challenges several classical cancer concepts and offers a unique and timely opportunity to study and target evolution in a tumor model with intriguing biological features having important implications for future therapy selection, monitoring and clinical trial design. The overarching 12-year aim driving this cross-disciplinary CRC is to deliver novel, improved individualized treatment strategies based on a mechanistic understanding of neuroblastoma evolution. We postulate that intense interplay occurs in neuroblastoma evolution between (i) genetic and non-genetic evolutionary mechanisms and (ii) genomic and phenotypic intratumor heterogeneity. The central CRC idea is that this interplay drives neuroblastoma cells to evade therapy. An integrated research approach is required to decode (mainly 1st and 2nd funding phases) and therapeutically target (mainly 3rd funding phase) these complex processes. Innovative technologies allow the study of tumor evolution at previously unprecedented single-cell resolution, most promising to generate new clinically relevant insights. The CRC aims to take a leading role in the emerging field of neuroblastoma evolution by (i) comprehensively characterizing, functionally evaluating and understanding its tumor intrinsic mechanisms (Research Area A); (ii) dissecting/targeting signaling driven by the neuroblastoma oncogenes MYCN and ALK (Research Area B) and (iii) illuminating how tumor cell interactions with their micro- and macroenvironments contribute to evolution (Research Area C). We will use modern data science approaches to conduct cross-platform analysis of molecular patient datasets and cross-species analyses from human, mouse, zebrafish and chicken embryo data. Uniquely, CRC1588 will have direct access to the national neuroblastoma clinical trial and national biobank, enabling immediate transfer of new molecular knowledge into academic clinical trials. The CRC constitutes a long-term research area perfectly fitting the supportive Charité and Berlin research environments, aiming to efficiently translate systems medicine approaches for diseases with high medical need. The CRC will benefit international talent recruitment and novel interdisciplinary training formats in the highly specialized field of pediatric cancer research and support stakeholder involvement.
DFG Programme
Collaborative Research Centres
Current projects
-
A01 - Tracing clonal evolution in neuroblastoma by single-cell DNA sequencing
(Project Heads
Fischer, Matthias
;
Peifer, Martin
)
-
A02 - Dissecting chromatin accessibility and somatic mitochondrial DNA mutational landscapes in single cells during neuroblastoma evolution
(Project Heads
Haase, Kerstin
;
Haghverdi, Laleh
;
Ludwig, Leif
)
-
A03 - Extrachromosomal DNA (ecDNA) evolution and re-integration as a driver of progression and metastasis
(Project Heads
Henssen, Anton
;
Schwarz, Roland
)
-
A04 - Spatial organization and function of RNA in primary neuroblastomas and their TME
(Project Heads
Eggert, Angelika
;
Rajewsky, Nikolaus
)
-
A05 - The role of epigenetic modifications in neuroblastoma evolution and plasticity
(Project Heads
Akalin, Altuna
;
Westermann, Frank
)
-
A06 - The post-translationally modified neuroblastoma proteome as a source for druggable vulnerabilities
(Project Heads
Dörr, Jan
;
Mertins, Philipp
)
-
A07 - Targeted phosphoproteomics-based prediction of drug responses to combinatorial treatment
(Project Heads
Blüthgen, Nils
;
Selbach, Matthias
)
-
B01 - The role of chromosome topology in MYCN function and neuroblastoma evolution and its potential for clinical exploitation
(Project Heads
Eilers, Martin
;
Papadopoulos, Dimitrios
)
-
B02 - Targeting MYCN-dependent resolution of transcription-replication conflicts
(Project Heads
Büchel, Gabriele
;
Henssen, Anton
)
-
B03 - Targeting MYCN multiprotein complexes in neuroblastoma with miniproteins
(Project Heads
Dörr, Jan
;
Wanker, Erich E.
)
-
B04 - Targeting rewired ALK/RAS/MAPK signaling in neuroblastoma
(Project Heads
Blüthgen, Nils
;
Schulte, Johannes Hubertus
)
-
B05 - Plasma proteome and metabolome signatures to better understand, monitor and predict neuroblastoma evolution
(Project Heads
Deubzer, Ph.D., Hedwig E.
;
Ralser, Markus
)
-
B06 - Preventing neuroblastoma relapses by molecular characterization and targeted elimination of minimal residual disease cells
(Project Heads
Künkele-Langer, Annette
;
Versteeg, Rogier
)
-
C01 - Neuroblastoma cell states and their link to the microenvironment, disease progression and therapy response
(Project Heads
Henssen, Anton
;
Junker, Jan Philipp
)
-
C02 - Uncovering neuroblastoma cell plasticity in embryonic grafts using a universal transcription factor network
(Project Heads
Grosswendt, Stefanie
;
Haghverdi, Laleh
)
-
C03 - Deciphering the principles of neuroblastoma metastasis to the bone marrow by integrated single-cell and spatial multi-omics
(Project Heads
Eggert, Angelika
;
Haas, Simon
)
-
C04 - Engineering CAR T cells to better find and eradicate neuroblastoma
(Project Heads
Höpken, Uta Elisabeth
;
Künkele-Langer, Annette
)
-
C05 - Spontaneous and treatment-induced T cell responses against neuroblastoma
(Project Head
Willimsky, Gerald
)
-
C06 - The role of neuroblastoma-secreted exosomes in pre-metastatic niche formation
(Project Heads
Deubzer, Ph.D., Hedwig E.
;
Gerhardt, Holger
)
-
INF - A data analysis ecosystem for the CRC 1588: Omics data processing and management
(Project Head
Beule, Dieter
)
-
MGK - The Neuroblastoma Evolution integrated research training group
(Project Heads
Blüthgen, Nils
;
Künkele-Langer, Annette
)
-
Z01 - Central coordination of CRC1588
(Project Head
Eggert, Angelika
)
-
Z02 - Support with preclinical animal models
(Project Heads
Dörr, Jan
;
Heeren-Hagemann, Anja
;
Schulte, Johannes Hubertus
)
-
Z03 - Molecular technology infrastructure and support
(Project Heads
Altmüller, Janine
;
Lodrini, Marco
;
Ralser, Markus
)