SPP 1656:  Intestinal Microbiota - A Microbial Ecosystem at the Edge between Immune Homeostasis and Inflammation

• Subject Area: Medicine
• Term: from 2013 to 2021
• Project identifier: Deutsche Forschungsgemeinschaft (DFG) - Project number 220134278

• Final Report Year: 2021

Final Report Abstract

No abstract available

Publications

• Active suppression of intestinal CD4(+)TCRalphabeta(+) T-lymphocyte maturation during the postnatal period. Nat Commun 2015;6:7725
  Torow N, Yu K, Hassani K, Freitag J, Schulz O, Basic M, Brennecke A, Sparwasser T, Wagner N, Bleich A, Lochner M, Weiss S, Forster R, Pabst O, Hornef MW
  (See online at https://doi.org/10.1038/ncomms8725)
• Caspase-8 controls the gut response to microbial challenges by Tnf-alpha-dependent and independent pathways. Gut 2015;64:601-10
  Gunther C, Buchen B, He GW, Hornef M, Torow N, Neumann H, Wittkopf N, Martini E, Basic M, Bleich A, Watson AJ, Neurath MF, Becker C
  (See online at https://doi.org/10.1136/gutjnl-2014-307226)
• Diversification of memory B cells drives the continuous adaptation of secretory antibodies to gut microbiota. Nat Immunol 2015;16:880-8
  Lindner C, Thomsen I, Wahl B, Ugur M, Sethi MK, Friedrichsen M, Smoczek A, Ott S, Baumann U, Suerbaum S, Schreiber S, Bleich A, Gaboriau-Routhiau V, Cerf- Bensussan N, Hazanov H, Mehr R, Boysen P, Rosenstiel P, Pabst O
  (See online at https://doi.org/10.1038/ni.3213)
• Expression of the Blood-Group-Related Gene B4galnt2 Alters Susceptibility to Salmonella Infection. PLoS Pathog 2015;11:e1005008
  Rausch P, Steck N, Suwandi A, Seidel JA, Kunzel S, Bhullar K, Basic M, Bleich A, Johnsen JM, Vallance BA, Baines JF, Grassl GA
  (See online at https://doi.org/10.1371/journal.ppat.1005008)
• Interferon-lambda and interleukin 22 act synergistically for the induction of interferonstimulated genes and control of rotavirus infection. Nat Immunol 2015;16:698-707
  Hernandez PP, Mahlakoiv T, Yang I, Schwierzeck V, Nguyen N, Guendel F, Gronke K, Ryffel B, Hoelscher C, Dumoutier L, Renauld JC, Suerbaum S, Staeheli P, Diefenbach A
  (See online at https://doi.org/10.1038/ni.3180)
• Analysis of factors contributing to variation in the C57BL/6J fecal microbiota across German animal facilities. Int J Med Microbiol 2016;306:343-355
  Rausch P, Basic M, Batra A, Bischoff SC, Blaut M, Clavel T, Glasner J, Gopalakrishnan S, Grassl GA, Gunther C, Haller D, Hirose M, Ibrahim S, Loh G, Mattner J, Nagel S, Pabst O, Schmidt F, Siegmund B, Strowig T, Volynets V, Wirtz S, Zeissig S, Zeissig Y, Bleich A, Baines JF
  (See online at https://doi.org/10.1016/j.ijmm.2016.03.004)
• Dysbiotic gut microbiota causes transmissible Crohn's disease-like ileitis independent of failure in antimicrobial defence. Gut 2016;65:225-37
  Schaubeck M, Clavel T, Calasan J, Lagkouvardos I, Haange SB, Jehmlich N, Basic M, Dupont A, Hornef M, von Bergen M, Bleich A, Haller D
  (See online at https://doi.org/10.1136/gutjnl-2015-309333)
• Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium. Nat Microbiol 2016;2:16215
  Brugiroux S, Beutler M, Pfann C, Garzetti D, Ruscheweyh HJ, Ring D, Diehl M, Herp S, Lotscher Y, Hussain S, Bunk B, Pukall R, Huson DH, Munch PC, McHardy AC, McCoy KD, Macpherson AJ, Loy A, Clavel T, Berry D, Stecher B
  (See online at https://doi.org/10.1038/nmicrobiol.2016.215)
• Multicenter quality assessment of 16S ribosomal DNA- sequencing for microbiome analyses reveals high inter-center variability. Int J Med Microbiol 2016;306:334-342
  Hiergeist A, Reischl U, Priority Program Intestinal Microbiota Consortium/ quality assessment participants, Gessner A
  (See online at https://doi.org/10.1016/j.ijmm.2016.03.005)
• The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota. Nat Microbiol 2016;1:16131
  Lagkouvardos I, Pukall R, Abt B, Foesel BU, Meier-Kolthoff JP, Kumar N, Bresciani A, Martinez I, Just S, Ziegler C, Brugiroux S, Garzetti D, Wenning M, Bui TP, Wang J, Hugenholtz F, Plugge CM, Peterson DA, Hornef MW, Baines JF, Smidt H, Walter J, Kristiansen K, Nielsen HB, Haller D, Overmann J, Stecher B, Clavel T
  (See online at https://doi.org/10.1038/nmicrobiol.2016.131)
• Enhancement of IFNgamma Production by Distinct Commensals Ameliorates Salmonella-Induced Disease. Cell Host Microbe 2017;21:682-694 e5
  Thiemann S, Smit N, Roy U, Lesker TR, Galvez EJC, Helmecke J, Basic M, Bleich A, Goodman AL, Kalinke U, Flavell RA, Erhardt M, Strowig T
  (See online at https://doi.org/10.1016/j.chom.2017.05.005)
• Oral versus intravenous iron replacement therapy distinctly alters the gut microbiota and metabolome in patients with IBD. Gut 2017;66:863-871
  Lee T, Clavel T, Smirnov K, Schmidt A, Lagkouvardos I, Walker A, Lucio M, Michalke B, Schmitt-Kopplin P, Fedorak R, Haller D
  (See online at https://doi.org/10.1136/gutjnl-2015-309940)
• Chronic intestinal inflammation in mice expressing viral Flip in epithelial cells. Mucosal Immunol 2018;11:1621-1629
  Ruder B, Murtadak V, Sturzl M, Wirtz S, Distler U, Tenzer S, Mahapatro M, Greten FR, Hu Y, Neurath MF, Cesarman E, Ballon G, Gunther C, Becker C
  (See online at https://doi.org/10.1038/s41385-018-0068-6)
• Neonatal selection by Toll-like receptor 5 influences long-term gut microbiota composition. Nature 2018;560:489-493
  Fulde M, Sommer F, Chassaing B, van Vorst K, Dupont A, Hensel M, Basic M, Klopfleisch R, Rosenstiel P, Bleich A, Backhed F, Gewirtz AT, Hornef MW
  (See online at https://doi.org/10.1038/s41586-018-0395-5)
• Neonatally imprinted stromal cell subsets induce tolerogenic dendritic cells in mesenteric lymph nodes. Nat Commun 2018;9:3903
  Pezoldt J, Pasztoi M, Zou M, Wiechers C, Beckstette M, Thierry GR, Vafadarnejad E, Floess S, Arampatzi P, Buettner M, Schweer J, Fleissner D, Vital M, Pieper DH, Basic M, Dersch P, Strowig T, Hornef M, Bleich A, Bode U, Pabst O, Bajenoff M, Saliba AE, Huehn J
  (See online at https://doi.org/10.1038/s41467-018-06423-7)
• The gut microbiota promotes hepatic fatty acid desaturation and elongation in mice. Nat Commun 2018;9:3760
  Kindt A, Liebisch G, Clavel T, Haller D, Hormannsperger G, Yoon H, Kolmeder D, Sigruener A, Krautbauer S, Seeliger C, Ganzha A, Schweizer S, Morisset R, Strowig T, Daniel H, Helm D, Kuster B, Krumsiek J, Ecker J
  (See online at https://doi.org/10.1038/s41467-018-05767-4)
• Akkermansia muciniphila strain ATCC BAA-835 does not promote short-term intestinal inflammation in gnotobiotic interleukin-10-deficient mice. Gut Microbes 2019;10:188-203
  Ring C, Klopfleisch R, Dahlke K, Basic M, Bleich A, Blaut M
  (See online at https://doi.org/10.1080/19490976.2018.1511663)
• Deletion of the Casp8 gene in mice results in ileocolitis, gut barrier dysfunction, and malassimilation, which can be partially attenuated by inulin or sodium butyrate. Am J Physiol Gastrointest Liver Physiol 2019;317:G493-G507
  Kaden-Volynets V, Gunther C, Zimmermann J, Beisner J, Becker C, Bischoff SC
  (See online at https://doi.org/10.1152/ajpgi.00297.2018)
• Intestinal development and homeostasis require activation and apoptosis of diet-reactive T cells. J Clin Invest 2019;129:1972-1983
  Visekruna A, Hartmann S, Sillke YR, Glauben R, Fischer F, Raifer H, Mollenkopf H, Bertrams W, Schmeck B, Klein M, Pagenstecher A, Lohoff M, Jacob R, Pabst O, Bland PW, Luu M, Romero R, Siegmund B, Rajalingam K, Steinhoff U
  (See online at https://doi.org/10.1172/jci98929)
• Microbial Colonization in Adulthood Shapes the Intestinal Macrophage Compartment. J Crohns Colitis 2019;13:1173-1185
  Schmidt F, Dahlke K, Batra A, Keye J, Wu H, Friedrich M, Glauben R, Ring C, Loh G, Schaubeck M, Hackl H, Trajanoski Z, Schumann M, Kuhl AA, Blaut M, Siegmund B
  (See online at https://doi.org/10.1093/ecco-jcc/jjz036)
• Mucispirillum schaedleri Antagonizes Salmonella Virulence to Protect Mice against Colitis. Cell Host Microbe 2019;25:681-694 e8
  Herp S, Brugiroux S, Garzetti D, Ring D, Jochum LM, Beutler M, Eberl C, Hussain S, Walter S, Gerlach RG, Ruscheweyh HJ, Huson D, Sellin ME, Slack E, Hanson B, Loy A, Baines JF, Rausch P, Basic M, Bleich A, Berry D, Stecher B
  (See online at https://doi.org/10.1016/j.chom.2019.03.004)
• Reproducible Colonization of Germ-Free Mice With the Oligo-Mouse-Microbiota in Different Animal Facilities. Front Microbiol 2019;10:2999
  Eberl C, Ring D, Munch PC, Beutler M, Basic M, Slack EC, Schwarzer M, Srutkova D, Lange A, Frick JS, Bleich A, Stecher B
  (See online at https://doi.org/10.3389/fmicb.2019.02999)
• Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family. Microbiome 2019;7:28
  Lagkouvardos I, Lesker TR, Hitch TCA, Galvez EJC, Smit N, Neuhaus K, Wang J, Baines JF, Abt B, Stecher B, Overmann J, Strowig T, Clavel T
  (See online at https://doi.org/10.1186/s40168-019-0637-2)
• Temporally Distinct Functions of the Cytokines IL- 12 and IL-23 Drive Chronic Colon Inflammation in Response to Intestinal Barrier Impairment. Immunity 2019;51:367-380 e4
  Eftychi C, Schwarzer R, Vlantis K, Wachsmuth L, Basic M, Wagle P, Neurath MF, Becker C, Bleich A, Pasparakis M
  (See online at https://doi.org/10.1016/j.immuni.2019.06.008)
• A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity. Nat Commun 2020;11:6389
  Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernandez SB, Heine V, Buhl EM, P MDA, Cumbo F, Fischoder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Sproer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T
  (See online at https://doi.org/10.1038/s41467-020-19929-w)
• Aging-related liver degeneration is associated with increased bacterial endotoxin and lipopolysaccharide binding protein levels. Am J Physiol Gastrointest Liver Physiol 2020;318:G736-G747
  Jin CJ, Baumann A, Brandt A, Engstler AJ, Nier A, Hege M, Schmeer C, Kehm R, Hohn A, Grune T, Witte OW, Bergheim I
  (See online at https://doi.org/10.1152/ajpgi.00345.2018)
• An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome. Cell Rep 2020;30:2909-2922 e6
  Lesker TR, Durairaj AC, Galvez EJC, Lagkouvardos I, Baines JF, Clavel T, Sczyrba A, McHardy AC, Strowig T
  (See online at https://doi.org/10.1016/j.celrep.2020.02.036)
• Bile acids drive the newborn's gut microbiota maturation. Nat Commun 2020;11:3692
  van Best N, Rolle-Kampczyk U, Schaap FG, Basic M, Olde Damink SWM, Bleich A, Savelkoul PHM, von Bergen M, Penders J, Hornef MW
  (See online at https://doi.org/10.1038/s41467-020-17183-8)
• Dietary cellulose induces anti-inflammatory immunity and transcriptional programs via maturation of the intestinal microbiota. Gut Microbes 2020;12:1-17
  Fischer F, Romero R, Hellhund A, Linne U, Bertrams W, Pinkenburg O, Eldin HS, Binder K, Jacob R, Walker A, Stecher B, Basic M, Luu M, Mahdavi R, Heintz-Buschart A, Visekruna A, Steinhoff U
  (See online at https://doi.org/10.1080/19490976.2020.1829962)
• Distinct Polysaccharide Utilization Determines Interspecies Competition between Intestinal Prevotella spp. Cell Host Microbe 2020;28:838-852 e6
  Galvez EJC, Iljazovic A, Amend L, Lesker TR, Renault T, Thiemann S, Hao L, Roy U, Gronow A, Charpentier E, Strowig T
  (See online at https://doi.org/10.1016/j.chom.2020.09.012)
• Disturbed gut microbiota and bile homeostasis in Giardia-infected mice contributes to metabolic dysregulation and growth impairment. Sci Transl Med 2020;12
  Riba A, Hassani K, Walker A, van Best N, von Zeschwitz D, Anslinger T, Sillner N, Rosenhain S, Eibach D, Maiga-Ascofare O, Rolle-Kampczyk U, Basic M, Binz A, Mocek S, Sodeik B, Bauerfeind R, Mohs A, Trautwein C, Kiessling F, May J, Klingenspor M, Gremse F, Schmitt-Kopplin P, Bleich A, Torow N, von Bergen M, Hornef MW
  (See online at https://doi.org/10.1126/scitranslmed.aay7019)
• Environmental Microbial Factors Determine the Pattern of Inflammatory Lesions in a Murine Model of Crohn's Disease-Like Inflammation. Inflamm Bowel Dis 2020;26:66-79
  Stolzer I, Kaden-Volynets V, Ruder B, Letizia M, Bittel M, Rausch P, Basic M, Bleich A, Baines JF, Neurath MF, Wirtz S, Weidinger C, Bischoff SC, Becker C, Gunther C
  (See online at https://doi.org/10.1093/ibd/izz142)
• Group 3 Innate Lymphoid Cells Program a Distinct Subset of IL-22BP-Producing Dendritic Cells Demarcating Solitary Intestinal Lymphoid Tissues. Immunity 2020;53:1015-1032 e8
  Guendel F, Kofoed-Branzk M, Gronke K, Tizian C, Witkowski M, Cheng HW, Heinz GA, Heinrich F, Durek P, Norris PS, Ware CF, Ruedl C, Herold S, Pfeffer K, Hehlgans T, Waisman A, Becher B, Giannou AD, Brachs S, Ebert K, Tanriver Y, Ludewig B, Mashreghi MF, Kruglov AA, Diefenbach A
  (See online at https://doi.org/10.1016/j.immuni.2020.10.012)
• Integrated microbiota and metabolite profiles link Crohn's disease to sulfur metabolism. Nat Commun 2020;11:4322
  Metwaly A, Dunkel A, Waldschmitt N, Raj ACD, Lagkouvardos I, Corraliza AM, Mayorgas A, Martinez-Medina M, Reiter S, Schloter M, Hofmann T, Allez M, Panes J, Salas A, Haller D
  (See online at https://doi.org/10.1038/s41467-020-17956-1)